3RIS

Crystal structure of the catalytic domain of UCHL5, a proteasome-associated human deubiquitinating enzyme, reveals an unproductive form of the enzyme


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.201

Literature

Macromolecules
Sequence Display for 3RIS

Classification: HYDROLASE

Total Structure Weight: 110849.23

Macromolecule Entities
Molecule Chains Length Organism Details
Ubiquitin carboxyl-terminal hydrolase isozyme L5 A, B, C, D 245 Homo sapiens EC#: 3.4.19.12 IUBMB
Fragment: Catalytic domain (UNP Residues 1-140)
Gene Name(s): UCHL5 Gene View UCH37 AD-019 CGI-70
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B, D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.201
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 87.39 α = 90.00
b = 41.67 β = 89.93
c = 138.73 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-04-14
  • Released Date: 2011-11-09
  • Deposition author(s): Das, C., Permaul, M., Maiti, T.K.

Revision History

  • Version 1_0: 2011-11-09

    Type: Initial release

  • Version 1_1: 2011-12-14

    Type: Database references