3R1X

Crystal structure of 2-oxo-3-deoxygalactonate kinase from Klebsiella pneumoniae

Structural Biology Knowledgebase: 3R1X SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.09 Å
  • R-Value Free: 0.199
  • R-Value Work: 0.174

Literature

Macromolecules
Sequence Display for 3R1X

Classification: TRANSFERASE

Total Structure Weight: 128443.02

Macromolecule Entities
Molecule Chains Length Organism Details
2-oxo-3-deoxygalactonate kinase A, B, C, D 295 Klebsiella pneumoniae EC#: 2.7.1.58 IUBMB
Gene Name(s): dgoK KPN_04097
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A, B, C, D GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FMT
Query on FMT

A, D FORMIC ACID
C H2 O2
BDAGIHXWWSANSR-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.09 Å
  • R-Value Free: 0.199
  • R-Value Work: 0.174
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 85.51 α = 90.00
b = 134.03 β = 90.00
c = 139.91 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-03-11
  • Released Date: 2011-04-13
  • Deposition author(s): Michalska, K., Cuff, M.E., Tesar, C., Feldmann, B., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
  • Previous versions: 3NUW

Revision History

  • 2011-09-21
    Type: Other | Details: Add new TargetDB related ID
  • 2011-08-10
    Type: Citation | Details: Citation update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4