3QYQ

1.8 Angstrom resolution crystal structure of a putative deoxyribose-phosphate aldolase from Toxoplasma gondii ME49


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.201
  • R-Value Work: 0.166

Literature

Macromolecules
Sequence Display for 3QYQ

Classification: LYASE

Total Structure Weight: 130205.59

Macromolecule Entities
Molecule Chains Length Organism Details
Deoxyribose-phosphate aldolase, putative A, B, C, D 293 Toxoplasma gondii EC#: 4.1.2.4 IUBMB
Fragment: UNP residues 6-281
Gene Name(s): TGGT1_318750 TGME49_318750 TGVEG_318750
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SUC
Query on SUC

A, B SUCROSE
C12 H22 O11
CZMRCDWAGMRECN-UGDNZRGBSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B, C, D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 70.92 α = 62.90
b = 72.19 β = 89.80
c = 73.05 γ = 88.85

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-03-03
  • Released Date: 2011-03-30
  • Deposition author(s): Halavaty, A.S., Ruan, J., Minasov, G., Shuvalova, L., Ueno, A., Igarashi, M., Ngo, H., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History

  • Version 1_0: 2011-03-30

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance

  • Version 1_2: 2014-01-15

    Type: Refinement description

  • Version 1_3: 2014-11-12

    Type: Database references

  • Version 1_4: 2015-04-08

    Type: Database references