3QFM

Crystal structure of Streptococcal asymmetric Ap4A hydrolase and phosphodiesterase Spr1479/SapH


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.195

Literature

Macromolecules
Sequence Display for 3QFM

Classification: Hydrolase

Total Structure Weight: 63067.39

Macromolecule Entities
Molecule Chains Length Organism Details
Putative uncharacterized protein A, B 270 Streptococcus pneumoniae Fragment: UNP residues 1-262
Gene Name(s): spr1479
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FE
Query on FE

A, B FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A, B MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.195
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 56.56 α = 90.00
b = 75.10 β = 90.00
c = 148.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-01-22
  • Released Date: 2011-08-24
  • Deposition author(s): Jiang, Y.L., Zhang, J.W., Yu, W.L., Cheng, W., Zhang, C.C., Zhou, C.Z., Chen, Y.

Revision History

No revisions since initial release