3QBV

Structure of designed orthogonal interaction between CDC42 and nucleotide exchange domains of intersectin

Structural Biology Knowledgebase: 3QBV SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.65 Å
  • R-Value Free: 0.284
  • R-Value Work: 0.241

Literature

Macromolecules
Sequence Display for 3QBV

Classification: PROTEIN BINDING / SIGNALING PROTEIN

Total Structure Weight: 121929.59

Macromolecule Entities
Molecule Chains Length Organism Details
Cell division control protein 42 homolog A, C 178 Homo sapiens Fragment: UNP Residues 1-178
Mutation: F56R, R163K
Gene Name(s): CDC42 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Intersectin-1 B, D 351 Homo sapiens Fragment: DH AND PH DOMAINS (UNP Residues 1229-1571)
Mutation: S1373E
Gene Name(s): ITSN1 Gene View ITSN SH3D1A
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GDP
Query on GDP

A, C GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.65 Å
  • R-Value Free: 0.284
  • R-Value Work: 0.241
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 85.46 α = 90.00
b = 80.06 β = 108.23
c = 94.59 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-01-14
  • Released Date: 2012-02-08
  • Deposition author(s): Kapp, G.T., Remenyi, A., Lim, W.A., Kortemme, T.

Revision History

  • 2012-04-25
    Type: Citation | Details: Citation update
  • 2012-04-18
    Type: Citation | Details: Citation update
  • 2012-03-21
    Type: Citation | Details: Citation update