3PU9

Crystal structure of serine/threonine phosphatase Sphaerobacter thermophilus DSM 20745

Structural Biology Knowledgebase: 3PU9 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.217
  • R-Value Work: 0.178

Literature

Macromolecules
Sequence Display for 3PU9

Classification: TRANSFERASE

Total Structure Weight: 51406.20

Macromolecule Entities
Molecule Chains Length Organism Details
Protein serine/threonine phosphatase A, B 242 Sphaerobacter thermophilus Gene Name(s): Sthe_0969
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.217
  • R-Value Work: 0.178
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 60.17 α = 90.00
b = 54.71 β = 99.51
c = 63.26 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-12-03
  • Released Date: 2010-12-22
  • Deposition author(s): Nocek, B., Tesar, C., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History

  • 2012-08-08
    Type: Other | Details: update PSI information
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4