3PNN

The crystal structure of a glycosyltransferase from Porphyromonas gingivalis W83


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.183
  • R-Value Work: 0.166

Literature

Macromolecules
Sequence Display for 3PNN

Classification: TRANSFERASE

Total Structure Weight: 34866.42

Macromolecule Entities
Molecule Chains Length Organism Details
Conserved domain protein A 303 Porphyromonas gingivalis Gene Name(s): PG_0160
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.183
  • R-Value Work: 0.166
  • Space Group: P 61 2 2

Unit Cell:

Length (Å) Angle (°)
a = 109.04 α = 90.00
b = 109.04 β = 90.00
c = 124.64 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-11-19
  • Released Date: 2010-12-15
  • Deposition author(s): Tan, K., Hatzos-Skintges, C., Bearden, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History

  • 2012-08-08
    Type: Other | Details: update PSI information
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4