3PGM

THE STRUCTURE OF YEAST PHOSPHOGLYCERATE MUTASE AT 0.28 NM RESOLUTION

Structural Biology Knowledgebase: 3PGM SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Work:

Literature

Macromolecules
Sequence Display for 3PGM

Classification: TRANSFERASE (PHOSPHORYL)

Total Structure Weight: 55094.70

Macromolecule Entities
Molecule Chains Length Organism Details
Phosphoglycerate mutase 1 A, B 244 Saccharomyces cerevisiae EC#: 5.4.2.11 IUBMB
Mutation: K46G, Y48N, P49V, D50L, L52D, E99Q, ΔD169, ΔL170, S170V, V174S, T205P, I207T, P208I
Gene Name(s): GPM1 GPM YKL152C YKL607
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
3PG
Query on 3PG

A, B 3-PHOSPHOGLYCERIC ACID
C3 H7 O7 P
OSJPPGNTCRNQQC-UWTATZPHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Observed:
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 96.40 α = 90.00
b = 85.90 β = 120.60
c = 81.90 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1982-04-06
  • Released Date: 1982-05-26
  • Deposition author(s): Campbell, J.W., Hodgson, G.I., Warwicker, J., Winn, S.I., Watson, H.C.
  • Previous versions: 1PGM

Revision History

  • 2013-08-14
    Type: Other | Details: Non-polymer entities re-assigned with proper ids
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4