3PA1
Crystal Structure of P Domain from Norwalk Virus Strain Vietnam 026 in complex with HBGA type A
- PDB DOI: https://doi.org/10.2210/pdb3PA1/pdb
- Classification: VIRAL PROTEIN
- Organism(s): Norwalk virus
- Expression System: Escherichia coli
- Mutation(s): No 
- Deposited: 2010-10-18 Released: 2011-05-11 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.48 Å
- R-Value Free: 0.198 
- R-Value Work: 0.178 
- R-Value Observed: 0.179 
wwPDB Validation   3D Report Full Report
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Capsid protein | 319 | Norwalk virus | Mutation(s): 0  Gene Names: Capsid protein | ||
UniProt | |||||
Find proteins for Q5F4T5 (Norwalk virus) Explore Q5F4T5  Go to UniProtKB:  Q5F4T5 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q5F4T5 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Small Molecules
Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
IMD Query on IMD | L [auth A], T [auth B] | IMIDAZOLE C3 H5 N2 RAXXELZNTBOGNW-UHFFFAOYSA-O | |||
EDO Query on EDO | D [auth A] E [auth A] F [auth A] G [auth A] H [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.48 Å
- R-Value Free: 0.198 
- R-Value Work: 0.178 
- R-Value Observed: 0.179 
- Space Group: P 1 21 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 65.194 | α = 90 |
b = 78.987 | β = 101.06 |
c = 70.1 | γ = 90 |
Software Name | Purpose |
---|---|
SERGUI | data collection |
PHASER | phasing |
PHENIX | refinement |
XDS | data reduction |
XSCALE | data scaling |
Entry History 
Deposition Data
- Released Date: 2011-05-11  Deposition Author(s): Hansman, G.S., Biertumpfel, C., Chen, L., Georgiev, I., McLellan, J.S., Katayama, K., Kwong, P.D.
Revision History (Full details and data files)
- Version 1.0: 2011-05-11
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Database references, Derived calculations, Structure summary - Version 2.1: 2023-09-06
Changes: Data collection, Database references, Refinement description, Structure summary