3OT1

Crystal structure of VC2308 protein


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.16 Å
  • R-Value Free: 0.168
  • R-Value Work: 0.144

Literature

Macromolecules
Sequence Display for 3OT1

Classification: STRUCTURAL GENOMICS

Total Structure Weight: 44821.01

Macromolecule Entities
Molecule Chains Length Organism Details
4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme A 208 Vibrio cholerae Details: CYS at residue 108
Gene Name(s): VC_2308
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme B 208 Vibrio cholerae Details: CSX at residue 108
Gene Name(s): VC_2308

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CL
Query on CL

B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

B SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET
CSX
Query on CSX
B L-PEPTIDE LINKING C3 H7 N O3 S CYS

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 64.39 α = 90.00
b = 64.68 β = 90.00
c = 81.59 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-09-10
  • Released Date: 2010-09-22
  • Deposition author(s): Niedzialkowska, E., Wawrzak, Z., Chruszcz, M., Porebski, P., Skarina, T., Huang, X., Grimshaw, S., Cymborowski, M., Savchenko, A., Anderson, W.F., Minor, W., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History

  • Version 1_0: 2010-09-22

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance