3ORI

Mycobacterium tuberculosis PknB kinase domain L33D mutant (crystal form 1)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.201

Literature

Macromolecules
Sequence Display for 3ORI

Classification: TRANSFERASE

Total Structure Weight: 136614.91

Macromolecule Entities
Molecule Chains Length Organism Details
Serine/threonine protein kinase A, B, C, D 311 Mycobacterium tuberculosis EC#: 2.7.11.1 IUBMB
Fragment: Kinase domain (UNP residues 1 to 308)
Mutation: L33D
Gene Name(s): pknB Rv0014c MTCY10H4.14c
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AGS
Query on AGS

A, B, C, D PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
ATP-GAMMA-S; ADENOSINE 5'-(3-THIOTRIPHOSPHATE); ADENOSINE 5'- (GAMMA-THIOTRIPHOSPHATE); ADENOSINE-5'-DIPHOSPHATE MONOTHIOPHOSPHATE (Synonym)
C10 H16 N5 O12 P3 S
NLTUCYMLOPLUHL-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A, B, C, D MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.201
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 80.93 α = 90.00
b = 51.54 β = 106.62
c = 141.41 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-09-07
  • Released Date: 2010-12-15
  • Deposition author(s): Lombana, T.N., Echols, N., Good, M.C., Thomsen, N.D., Ng, H.-L., Alber, T., TB Structural Genomics Consortium (TBSGC)

Revision History

  • 2011-07-13
    Type: Version format compliance
  • 2017-01-18
    Type: Database references