3O8P

Conformational plasticity of p38 MAP kinase DFG motif mutants in response to inhibitor binding


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.276
  • R-Value Work: 0.213

Literature

Macromolecules
Sequence Display for 3O8P

Classification: TRANSFERASE

Total Structure Weight: 41946.39

Macromolecule Entities
Molecule Chains Length Organism Details
Mitogen-activated protein kinase 14 A 360 Homo sapiens EC#: 2.7.11.24 IUBMB
Fragment: kinase domain
Mutation: D168G
Gene Name(s): MAPK14 Gene View CSBP CSBP1 CSBP2 CSPB1 MXI2 SAPK2A
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BMU
Query on BMU

A 1-(5-TERT-BUTYL-2-METHYL-2H-PYRAZOL-3-YL)- 3-(4-CHLORO-PHENYL)-UREA
C15 H19 Cl N4 O
FWIJKWMXNHRSRO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BOG
Query on BOG

A B-OCTYLGLUCOSIDE
C14 H28 O6
HEGSGKPQLMEBJL-RKQHYHRCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
BMU IC50: 16800 - 21000 nM (99) BindingDB
Kd: 1160 - 1190 nM (99) BindingDB

N/A in BindingMoad
Kd: 350 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.276
  • R-Value Work: 0.213
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 65.93 α = 90.00
b = 73.59 β = 90.00
c = 76.83 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-08-03
  • Released Date: 2010-09-01
  • Deposition author(s): Namboodiri, H.V., Karpusas, M., Bukhtiyarova, M., Springman, E.B.

Revision History

  • Version 1_0: 2010-09-01

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance