3O8L

Structure of phosphofructokinase from rabbit skeletal muscle


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.302
  • R-Value Work: 0.238

Literature

Macromolecules
Sequence Display for 3O8L

Classification: TRANSFERASE

Total Structure Weight: 169992.38

Macromolecule Entities
Molecule Chains Length Organism Details
6-phosphofructokinase, muscle type A, B 762 Oryctolagus cuniculus EC#: 2.7.1.11 IUBMB
Gene Name(s): PFKM Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ATP
Query on ATP

A, B ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ADP
Query on ADP

A, B ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

A, B PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.302
  • R-Value Work: 0.238
  • Space Group: P 61 2 2

Unit Cell:

Length (Å) Angle (°)
a = 163.68 α = 90.00
b = 163.68 β = 90.00
c = 356.58 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-08-03
  • Released Date: 2011-02-02
  • Deposition author(s): Banaszak, K., Chang, S.H., Rypniewski, W.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4