3NR1

A metazoan ortholog of SpoT hydrolyzes ppGpp and plays a role in starvation responses


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.203

Literature

Macromolecules
Sequence Display for 3NR1

Classification: hydrolase

Total Structure Weight: 40571.97

Macromolecule Entities
Molecule Chains Length Organism Details
HD domain-containing protein 3 A, B 178 Homo sapiens Gene Name(s): HDDC3 Gene View MESH1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MN
Query on MN

A, B MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.203
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 53.90 α = 90.00
b = 62.40 β = 95.30
c = 53.90 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-06-30
  • Released Date: 2010-09-08
  • Deposition author(s): Sun, D.W., Kim, H.Y., Kim, K.J., Jeon, Y.H., Chung, J.

Revision History

  • 2013-10-09
    Type: Citation | Details: Citation update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4