3ML9

Discovery of the Highly Potent PI3K/mTOR Dual Inhibitor PF-04691502 through Structure Based Drug Design

Structural Biology Knowledgebase: 3ML9 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.55 Å
  • R-Value Free: 0.298
  • R-Value Work: 0.242

Literature

Macromolecules
Sequence Display for 3ML9

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 111182.47

Macromolecule Entities
Molecule Chains Length Organism Details
Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma isoform A 966 Homo sapiens EC#: 2.7.1.153 IUBMB
Mutation: Q459R
Gene Name(s): PIK3CG Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ML9
Query on ML9

A 2-amino-8-[trans-4-(2-hydroxyethoxy)cyclohexyl]- 6-(6-methoxypyridin-3-yl)-4-methylpyrido[2,3- d]pyrimidin-7(8H)-one
C22 H27 N5 O4
XDLYKKIQACFMJG-WKILWMFISA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.55 Å
  • R-Value Free: 0.298
  • R-Value Work: 0.242
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 143.93 α = 90.00
b = 67.29 β = 95.46
c = 106.84 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-04-16
  • Released Date: 2010-06-02
  • Deposition author(s): Knighton, D.R.

Revision History

  • 2014-07-09
    Type: Citation | Details: Citation update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4