Cricket Paralysis Virus IGR IRES Domain 3 RNA bound to selenate, structure #2
DOI:10.2210/pdb3mja/pdb   NDB ID: NA0520
3MJA
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: RNA
    Structure Weight: 14315.16
    Molecule: Domain 3 of the cricket paralysis virus intergenic region IRES RNA
    Polymer: 1 Type: rna Length: 29
    Chains: B
    Fragment: Domain 3 RNA
    Mutation: U6178A
    Molecule: RNA (5'-R(P*UP*AP*AP*GP*AP*AP*AP*UP*UP*UP*AP*CP*CP*U)-3')
    Polymer: 2 Type: rna Length: 14
    Chains: C
    Fragment: Domain 3 RNA
    Mutation: A6199G
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    3MJ3    
    3MJB    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    SE4
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    SE4 O4 Se
    SELENATE ION
    SE4:3MJA
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:NA0520
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Kieft, J.S.,  Golden, B.L.,  Costantino, D.A.,  Chase, E.

    Deposition:   2010-04-12
    Release:   2010-05-19
    Last Modified (REVDAT):   2010-06-09
     
  •   Revision History    Hide
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    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    Resolution[Å]:   2.80
    R-Value: 0.233 (work)
    R-Free: 0.283
    Space Group: P 41 21 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 59.25 α = 90.00 
    b = 59.25 β = 90.00 
    c = 99.78 γ = 90.00