3MIT
Structure of Banana lectin-alpha-D-mannose complex
- PDB DOI: https://doi.org/10.2210/pdb3MIT/pdb
- Classification: SUGAR BINDING PROTEIN
- Organism(s): Musa acuminata
- Mutation(s): No
- Deposited: 2010-04-12 Released: 2010-09-08
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.32 Å
- R-Value Free: 0.246
- R-Value Work: 0.203
- R-Value Observed: 0.205
This is version 1.4 of the entry. See complete history.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Lectin | 141 | Musa acuminata | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for Q8L5H4 (Musa acuminata) Explore Q8L5H4 Go to UniProtKB: Q8L5H4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8L5H4 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MAN Query on MAN | C [auth A] D [auth A] E [auth A] J [auth B] K [auth B] | alpha-D-mannopyranose C6 H12 O6 WQZGKKKJIJFFOK-PQMKYFCFSA-N |  | ||
| HEZ Query on HEZ | G [auth A], H [auth A], I [auth A], N [auth B], O [auth B] | HEXANE-1,6-DIOL C6 H14 O2 XXMIOPMDWAUFGU-UHFFFAOYSA-N |  | ||
| ZN Query on ZN | F [auth A], M [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.32 Å
- R-Value Free: 0.246
- R-Value Work: 0.203
- R-Value Observed: 0.205
- Space Group: P 32 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 80.926 | α = 90 |
| b = 80.926 | β = 90 |
| c = 148.173 | γ = 120 |
| Software Name | Purpose |
|---|---|
| MAR345dtb | data collection |
| MOLREP | phasing |
| REFMAC | refinement |
| DENZO | data reduction |
| SCALEPACK | data scaling |
Entry History
Deposition Data
- Released Date: 2010-09-08 Deposition Author(s): Sharma, A., Vijayan, M.
Revision History (Full details and data files)
- Version 1.0: 2010-09-08
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2014-02-19
Changes: Database references - Version 1.3: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Structure summary - Version 1.4: 2023-11-01
Changes: Data collection, Database references, Refinement description, Structure summary
