3MDG

Crystal Structure of the 25kDa Subunit of Human Cleavage factor Im in complex with RNA UUGUAU

Structural Biology Knowledgebase: 3MDG SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.22 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.183

Literature

Macromolecules
Sequence Display for 3MDG

Classification: RNA binding / RNA

Total Structure Weight: 54649.34


Macromolecule Entities
Molecule Chains Length Organism Details
Cleavage and polyadenylation specificity factor subunit 5 A, B 227 Homo sapiens Gene Name(s): NUDT21 Gene View CFIM25 CPSF25 CPSF5
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(*UP*UP*GP*UP*AP*U)-3') C 6 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.22 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.183
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 71.88 α = 90.00
b = 73.88 β = 90.00
c = 96.73 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-03-30
  • Released Date: 2010-06-02
  • Deposition author(s): Yang, Q., Gilmartin, G.M., Doublie, S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4