3M83

Crystal structure of Acetyl xylan esterase (TM0077) from THERMOTOGA MARITIMA at 2.12 A resolution (paraoxon inhibitor complex structure)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.12 Å
  • R-Value Free: 0.205
  • R-Value Work: 0.168

Literature

Macromolecules
Sequence Display for 3M83

Classification: HYDROLASE

Total Structure Weight: 234038.77

Macromolecule Entities
Molecule Chains Length Organism Details
Acetyl xylan esterase A, B, C..., D, E, FA, B, C, D, E, F 337 Thermotoga maritima EC#: 3.1.1.41 IUBMB
Gene Name(s): axeA TM_0077
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

A, B, C, D, E, F 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

C, D, F ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B, C, D, E, F CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
SDP
Query on SDP
A, B, C, D, E, F L-PEPTIDE LINKING C7 H16 N O6 P SER

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 103.80 α = 90.00
b = 104.43 β = 90.00
c = 221.64 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-03-17
  • Released Date: 2010-05-12
  • Deposition author(s): Joint Center for Structural Genomics (JCSG)

Revision History

  • 2013-01-09
    Type: Citation | Details: Citation update
  • 2012-05-09
    Type: Citation | Details: Citation update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4