3M1I

Crystal structure of yeast CRM1 (Xpo1p) in complex with yeast RanBP1 (Yrb1p) and yeast RanGTP (Gsp1pGTP)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.220
  • R-Value Work: 0.175

Literature

Macromolecules
Sequence Display for 3M1I

Classification: PROTEIN TRANSPORT

Total Structure Weight: 167666.17

Macromolecule Entities
Molecule Chains Length Organism Details
GTP-binding nuclear protein GSP1/CNR1 A 219 Saccharomyces cerevisiae Mutation: Q71L
Gene Name(s): GSP1 CNR1 Gene View CST17 YLR293C L8003.19
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ran-specific GTPase-activating protein 1 B 191 Saccharomyces cerevisiae Mutation: ΔM1, ΔS2, ΔS3, ΔE4, ΔD5, ΔK6, ΔK7, ΔP8, ΔV9, ΔV10
Gene Name(s): YRB1 CST20 HTN1 Gene View SFO1 YDR002W YD8119.08
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Exportin-1 C 1049 Saccharomyces cerevisiae Mutation: ΔV377, ΔQ378, ΔR379, ΔL380, ΔP381, ΔA382, ΔT383, ΔE384, ΔM385, ΔS386, ΔP387, ΔL388, ΔI389, ΔQ390, ΔL391, ΔS392, ΔV393, ΔG394, ΔS395, ΔQ396, ΔA397, ΔI398, ΔS399, ΔT400, ΔG401, ΔS402, ΔG403, ΔA404, ΔL405, ΔN406, ΔP407, ΔE408, ΔY409, ΔM410, ΔK411, ΔR412, ΔF413
Gene Name(s): CRM1 KAP124 XPO1 Gene View YGR218W G8514
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GTP
Query on GTP

A GUANOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O14 P3
XKMLYUALXHKNFT-UUOKFMHZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.220
  • R-Value Work: 0.175
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 106.21 α = 90.00
b = 106.21 β = 90.00
c = 303.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-03-05
  • Released Date: 2010-06-02
  • Deposition author(s): Koyama, M., Matsuura, Y.

Revision History

  • 2014-03-05
    Type: Citation | Details: Citation update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4