3LUK

Crystal structure of MID domain from hAGO2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.188

Literature

Macromolecules
Sequence Display for 3LUK

Classification: RNA BINDING PROTEIN

Total Structure Weight: 47392.48

Macromolecule Entities
Molecule Chains Length Organism Details
Protein argonaute-2 A, B, C 138 Homo sapiens EC#: 3.1.26.n2 IUBMB
Fragment: MID domain
Gene Name(s): AGO2 Gene View EIF2C2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PO4
Query on PO4

A, B, C PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.188
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 40.80 α = 85.90
b = 47.85 β = 72.84
c = 66.85 γ = 82.86

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-02-17
  • Released Date: 2010-05-26
  • Deposition author(s): Frank, F., Sonenberg, N., Nagar, B.

Revision History

  • 2011-07-13
    Type: Version format compliance
  • 2014-04-16
    Type: Other