3LUJ

Crystal structure of MID domain from hAGO2 in complex with UMP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.194

Literature

Macromolecules
Sequence Display for 3LUJ

Classification: RNA BINDING PROTEIN

Total Structure Weight: 46950.41

Macromolecule Entities
Molecule Chains Length Organism Details
Protein argonaute-2 A, B, C 138 Homo sapiens EC#: 3.1.26.n2 IUBMB
Fragment: MID domain
Gene Name(s): AGO2 Gene View EIF2C2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
U5P
Query on U5P

A, B, C URIDINE-5'-MONOPHOSPHATE
C9 H13 N2 O9 P
DJJCXFVJDGTHFX-XVFCMESISA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
U5P N/A in BindingDB
Kd: 120000 nM  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.194
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 40.67 α = 86.08
b = 47.09 β = 72.99
c = 66.39 γ = 83.78

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-02-17
  • Released Date: 2010-05-26
  • Deposition author(s): Frank, F., Sonenberg, N., Nagar, B.

Revision History

  • Version 1_0: 2010-05-26

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance