3L6P

Crystal Structure of Dengue Virus 1 NS2B/NS3 protease


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.284
  • R-Value Work: 0.239

Literature

Macromolecules
Sequence Display for 3L6P

Classification: VIRAL PROTEIN HYDROLASE

Total Structure Weight: 25447.43

Macromolecule Entities
Molecule Chains Length Organism Details
fusion protein of nonstructural protein 2B and nonstructural protein 3 A 236 Dengue virus EC#: 2.1.1.56 IUBMB 2.1.1.57 IUBMB 2.7.7.48 IUBMB 3.4.21.91 IUBMB 3.6.1.15 IUBMB 3.6.4.13 IUBMB
Fragment: NS2B residues 1394-1440, NS3 PROTEASE residues 1476-1661
Mutation: ΔP1486, ΔE1487, ΔV1488, ΔE1489, ΔR1490, ΔA1491, ΔV1492, ΔL1493, ΔD1494, ΔD1495
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CD
Query on CD

A CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NI
Query on NI

A NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.284
  • R-Value Work: 0.239
  • Space Group: I 2 2 2

Unit Cell:

Length (Å) Angle (°)
a = 56.72 α = 90.00
b = 60.85 β = 90.00
c = 161.64 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-12-23
  • Released Date: 2010-03-02
  • Deposition author(s): Chandramouli, S., Joseph, J.S., Daudenarde, S., Gatchalian, J., Cornillez-Ty, C., Kuhn, P.

Revision History

  • Version 1_0: 2010-03-02

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance

  • Version 1_2: 2017-06-21

    Type: Database references, Source and taxonomy, Structure summary