3KPD

Crystal Structure of the CBS domain pair of protein MJ0100 in complex with 5 -methylthioadenosine and S-adenosyl-L-methionine.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.91 Å
  • R-Value Free: 0.334
  • R-Value Work: 0.234

Literature

Macromolecules
Sequence Display for 3KPD

Classification: UNKNOWN FUNCTION

Total Structure Weight: 56426.61

Macromolecule Entities
Molecule Chains Length Organism Details
Uncharacterized protein MJ0100 A, B, C, D 122 Methanocaldococcus jannaschii Gene Name(s): MJ0100
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SAM
Query on SAM

B, C S-ADENOSYLMETHIONINE
C15 H22 N6 O5 S
MEFKEPWMEQBLKI-FCKMPRQPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MTA
Query on MTA

A, C, D 5'-DEOXY-5'-METHYLTHIOADENOSINE
C11 H15 N5 O3 S
WUUGFSXJNOTRMR-IOSLPCCCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.91 Å
  • R-Value Free: 0.334
  • R-Value Work: 0.234
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 58.67 α = 90.00
b = 165.79 β = 90.00
c = 123.00 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-11-16
  • Released Date: 2010-01-12
  • Deposition author(s): Lucas, M., Oyenarte, I., Garcia, I.G., Arribas, E.A., Encinar, J.A., Kortazar, D., Fernandez, J.A., Mato, J.M., Martinez-Chantar, M.L., Martinez-Cruz, L.A.

Revision History

  • Version 1_0: 2010-01-12

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance