3JTO

Crystal structure of the c-terminal domain of YpbH

• PDB DOI: https://doi.org/10.2210/pdb3JTO/pdb

• Classification: PROTEIN BINDING
• Organism(s): Bacillus subtilis
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2009-09-14 Released: 2009-09-29 
• Deposition Author(s): Wang, F., Mei, Z., Qi, Y., Yan, C., Wang, J., Shi, Y.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free: 0.269 
• R-Value Work: 0.230 
• R-Value Observed: 0.232 

Literature

Crystal Structure of the MecA Degradation Tag

Wang, F., Mei, Z., Qi, Y., Yan, C., Xiang, S., Zhou, Z., Hu, Q., Wang, J., Shi, Y.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Biological Assembly 3  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 3 assigned by authors and generated by PISA (software)

Biological Assembly 4  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 4 assigned by authors and generated by PISA (software)

Biological Assembly 5  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 5 assigned by authors and generated by PISA (software)

Biological Assembly 6  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 6 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 63.08 kDa 
• Atom Count: 4,497 
• Modelled Residue Count: 550 
• Deposited Residue Count: 564 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Adapter protein mecA 2	A, B, C, D, E, F	94	Bacillus subtilis	Mutation(s): 0  Gene Names: ypbH
UniProt
Find proteins for P50734 (Bacillus subtilis (strain 168)) Explore P50734  Go to UniProtKB:  P50734

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free: 0.269 
• R-Value Work: 0.230 
• R-Value Observed: 0.232 
• Space Group: I 4₁ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 162.056	α = 90
b = 162.056	β = 90
c = 142.848	γ = 90

Software Package:

Software Name	Purpose
BSS	data collection
PHASER	phasing
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2009-09-29 
Deposition Author(s): Wang, F., Mei, Z., Qi, Y., Yan, C., Wang, J., Shi, Y.

Revision History  

• Version 1.0: 2009-09-29
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2023-11-01
  Changes: Data collection, Database references, Refinement description