3J5Q

Structure of TRPV1 ion channel in complex with DkTx and RTX determined by single particle electron cryo-microscopy

Structural Biology Knowledgebase: 3J5Q SBKB.org


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.8 Å
  • Aggregation State: Particle
  • Specimen Type: Vitreous Ice (cryo Em)
  • Reconstruction Method: Single Particle

Literature

Macromolecules
Sequence Display for 3J5Q

Classification: TRANSPORT PROTEIN / TOXIN

Total Structure Weight: 283596.47

Macromolecule Entities
Molecule Chains Length Organism Details
Transient receptor potential cation channel subfamily V member 1 B, D, E, G 598 Rattus norvegicus Fragment: SEE REMARK 999
Gene Name(s): Trpv1 Vr1 Vr1l
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Double-knot toxin A, C, F, H 31 Chilobrachys guangxiensis Fragment: SEE REMARK 999

Membrane Protein

Source: mpstruc | Group: ALPHA-HELICAL

Subgroup Name: Channels: Transient Receptor Potential (TRP)

Protein Name: TRPV1 transient receptor potential channel


Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
UNK
Query on UNK
A, B, C, D, E, F, G, H L-PEPTIDE LINKING C4 H9 N O2 --

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.8 Å
  • Aggregation State: Particle
  • Specimen Type: Vitreous Ice (cryo Em)
  • Reconstruction Method: Single Particle

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-10-28
  • Released Date: 2013-12-04
  • Deposition author(s): Liao, M., Cao, E., Julius, D., Cheng, Y.

Revision History

  • 2013-12-18
    Type: Citation | Details: Citation update
  • 2013-12-11
    Type: Citation | Details: Citation update