3IJR

2.05 Angstrom resolution crystal structure of a short chain dehydrogenase from Bacillus anthracis str. 'Ames Ancestor' in complex with NAD+


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.193
  • R-Value Work: 0.157

Literature

Macromolecules
Sequence Display for 3IJR

Classification: OXIDOREDUCTASE

Total Structure Weight: 262135.83

Macromolecule Entities
Molecule Chains Length Organism Details
Oxidoreductase, short chain dehydrogenase/reductase family A, B, C..., D, E, F, G, HA, B, C, D, E, F, G, H 291 Bacillus anthracis Gene Name(s): GBAA_0748 AB163_28115 AB164_12495 AB165_25960 AB166_28870 AB167_14730 AB168_19250 AB169_22400 AB170_16395 AB171_19140 AB893_04135 ADT20_19550 ADT21_01125 BF27_1170
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAD
Query on NAD

A, B, C, D, E, F, G, H NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B, C, D, E, F, G, H SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B, C, D, E, F, G, H MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D, E, F, G, H L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 112.75 α = 90.00
b = 123.20 β = 90.00
c = 169.77 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-08-04
  • Released Date: 2009-09-08
  • Deposition author(s): Halavaty, A.S., Minasov, G., Skarina, T., Onopriyenko, O., Gordon, E., Kwon, K., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History

  • Version 1_0: 2009-09-08

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Advisory, Refinement description, Version format compliance

  • Version 1_2: 2017-11-01

    Type: Refinement description