3IJ5

1.95 Angstrom Resolution Crystal Structure of 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase from Yersinia pestis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.202
  • R-Value Work: 0.163

Literature

Macromolecules
Sequence Display for 3IJ5

Classification: HYDROLASE

Total Structure Weight: 92359.41

Macromolecule Entities
Molecule Chains Length Organism Details
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase A, B, C, D 211 Yersinia pestis EC#: 3.1.3.45 IUBMB
Gene Name(s): kdsC YPO3578 y0150 YP_3833
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CL
Query on CL

A, C, D CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 130.60 α = 90.00
b = 77.94 β = 120.05
c = 96.88 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-08-03
  • Released Date: 2009-08-11
  • Deposition author(s): Minasov, G., Halavaty, A., Shuvalova, L., Dubrovska, I., Winsor, J., Papazisi, L., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History

  • Version 1_0: 2009-08-11

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Advisory, Refinement description, Source and taxonomy, Version format compliance

  • Version 1_2: 2017-11-01

    Type: Refinement description