3ICQ

Karyopherin nuclear state

Structural Biology Knowledgebase: 3ICQ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.294
  • R-Value Work: 0.243

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3ICQ

Classification: RNA BINDING PROTEIN

Total Structure Weight: 304351.88


Macromolecule Entities
Molecule Chains Length Organism Details
Exportin-T T, U 980 Schizosaccharomyces pombe Gene Name(s): los1 SPBP8B7.09c
GTP-binding nuclear protein GSP1/CNR1 B, C 171 Saccharomyces cerevisiae Fragment: Ran, UNP residues 9-179
Mutation: Q71L
Gene Name(s): GSP1 CNR1 Gene View CST17 YLR293C L8003.19
Macromolecule Entities
Molecule Chains Length Organism Details
RNA (62-MER) D, E 67 synthetic

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GTP
Query on GTP

B, C GUANOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O14 P3
XKMLYUALXHKNFT-UUOKFMHZSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

B, C MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.294
  • R-Value Work: 0.243
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 143.00 α = 90.00
b = 143.80 β = 90.00
c = 166.90 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-07-18
  • Released Date: 2009-08-25
  • Deposition author(s): Cook, A.G., Fukuhara, N., Jinek, M., Conti, E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4