3HZN

Structure of the Salmonella typhimurium nfnB dihydropteridine reductase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 0.222 
  • R-Value Work: 0.177 
  • R-Value Observed: 0.179 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structure of the Salmonella typhimurium nfnB dihydropteridine reductase

Anderson, S.M.Wawrzak, Z.Onopriyenko, O.Skarina, T.Anderson, W.F.Savchenko, A.Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Oxygen-insensitive NAD(P)H nitroreductase
A, B, C, D, E
A, B, C, D, E, F, G, H
220Salmonella enterica subsp. enterica serovar Typhimurium str. LT2Mutation(s): 0 
Gene Names: nfnBnfsISTM0578
EC: 1
UniProt
Find proteins for P15888 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720))
Explore P15888 
Go to UniProtKB:  P15888
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP15888
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 7 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
FLC
Query on FLC

Download Ideal Coordinates CCD File 
U [auth B],
WB [auth F]
CITRATE ANION
C6 H5 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-K
TLA
Query on TLA

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EA [auth C]
FA [auth C]
I [auth A]
NC [auth H]
V [auth B]
EA [auth C],
FA [auth C],
I [auth A],
NC [auth H],
V [auth B],
XB [auth F],
ZA [auth D]
L(+)-TARTARIC ACID
C4 H6 O6
FEWJPZIEWOKRBE-JCYAYHJZSA-N
SIN
Query on SIN

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AB [auth D]
AC [auth F]
BB [auth D]
BC [auth F]
CB [auth D]
AB [auth D],
AC [auth F],
BB [auth D],
BC [auth F],
CB [auth D],
DB [auth D],
EB [auth D],
EC [auth G],
FB [auth D],
FC [auth G],
GA [auth C],
GB [auth D],
GC [auth G],
HA [auth C],
HC [auth G],
IA [auth C],
IC [auth G],
J [auth A],
JA [auth C],
K [auth A],
KA [auth C],
L [auth A],
LA [auth C],
M [auth A],
MA [auth C],
N [auth A],
NA [auth C],
NB [auth E],
O [auth A],
OA [auth C],
OB [auth E],
OC [auth H],
PB [auth E],
PC [auth H],
QB [auth E],
QC [auth H],
RB [auth E],
RC [auth H],
SC [auth H],
W [auth B],
X [auth B],
Y [auth B],
YB [auth F],
ZB [auth F]
SUCCINIC ACID
C4 H6 O4
KDYFGRWQOYBRFD-UHFFFAOYSA-N
MLI
Query on MLI

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AA [auth B]
BA [auth B]
CC [auth F]
HB [auth D]
IB [auth D]
AA [auth B],
BA [auth B],
CC [auth F],
HB [auth D],
IB [auth D],
JB [auth D],
JC [auth G],
KC [auth G],
P [auth A],
PA [auth C],
Q [auth A],
QA [auth C],
R [auth A],
RA [auth C],
S [auth A],
SA [auth C],
SB [auth E],
TC [auth H],
Z [auth B]
MALONATE ION
C3 H2 O4
OFOBLEOULBTSOW-UHFFFAOYSA-L
ACT
Query on ACT

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KB [auth D],
LC [auth G],
TA [auth C]
ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
CL
Query on CL

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CA [auth B]
DC [auth F]
LB [auth D]
MB [auth D]
MC [auth G]
CA [auth B],
DC [auth F],
LB [auth D],
MB [auth D],
MC [auth G],
T [auth A],
TB [auth E],
UA [auth C],
UB [auth E],
VA [auth C],
WA [auth C],
XA [auth C]
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
NA
Query on NA

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DA [auth B],
UC [auth H],
VB [auth E],
YA [auth C]
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C, D, E
A, B, C, D, E, F, G, H
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 280.34α = 90
b = 96.76β = 90.36
c = 131.84γ = 90
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
BLU-MAXdata collection
HKL-2000data reduction
SHARPphasing

Structure Validation

View Full Validation Report



Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2009-07-07
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Source and taxonomy, Version format compliance
  • Version 1.2: 2017-11-01
    Changes: Refinement description