POP-OUT | CLOSE
MyPDB Login - Username: Password:

About: MyPDB stores and automatically runs your favorite queries. Email alerts are sent when matching structures are found.

    MyPDB Login
MyPDB: Login | Register
RCSB PDB Protein Data Bank | Home A Member of the wwPDB

An Information Portal to Biological Macromolecular Structures

As of Tuesday Feb 09, 2010 at 4 PM PST there are 63271 Structures RSS Feed for the Latest Released Structures Help | Latest Released  |  PDB Statistics Help | PDB Statistics
RCSB PDB Protein Data Bank | Home

Print Options: BW Safe Color Safe Print




URL:
 
 
Crystal structure of T. thermophilus Argonaute complexed with DNA guide strand and 19-nt RNA target strand with two Mg2+ at the cleavage site
 
 
DOI:10.2210/pdb3hvr/pdb   NDB ID: NA0072
3HVR
 
Primary Citation
spinning wheel
 
 
  •  
    Move Section Molecular Description Hide
    Classification: Nucleic Acid Binding Protein/dna/rna
    Structure Weight: 178856.47
     
    Molecule:Argonaute
    Polymer:1Type:polypeptide(L)Length:685
    Chains:A, B
    Molecule:5'-D(P*TP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*TP*GP*AP*TP*AP*GP*T)-3'
    Polymer:2Type:polydeoxyribonucleotideLength:21
    Chains:C, M
    Molecule:5'-R(*UP*AP*UP*AP*CP*AP*AP*CP*CP*UP*AP*CP*UP*AP*CP*CP*UP*CP*G)-3'
    Polymer:3Type:polyribonucleotideLength:19
    Chains:D, N
     
     
  •  
    Move Section Source Hide
    Polymer: 1
    Scientific Name: Thermus thermophilus hb27 Go to NCBI Taxonomy entry Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct Go to NCBI Taxonomy entry  
    Polymer: 3
    Scientific Name: Synthetic construct Go to NCBI Taxonomy entry  
     
     
  •  
    Move Section Related PDB Entries Hide
    Id Details
    3DLB  Same protein complexed with 10-nt DNA guide strand 
    3DLH  same protein complexed with same DNA guide strand 
    3F73  Same protein complexed with same DNA guide strand and 20-nt RNA target with two mismatches. 
    3HGE  Mutant protein complexed with same DNA guide and 20-nt RNA taget containing one nucleic acid bulge 
    3HJF  Mutant protein complexed with same DNA guide and 15-nt RNA guide 
    3HK2  Mutant protein complexed with same DNA guide and 19-nt RNA guide 
     
     
  •  
    Move Section Ligand Chemical Component Hide
    Identifier Name Formula Interaction View Links
    MG     MAGNESIUM ION Mg 3DLigand Explorer Link out to Ligand Expos:MG Link out to SuperLigands:MG Link out to SuperHapten:MG
    PO4     PHOSPHATE ION O4 P 3DLigand Explorer Link out to Ligand Expos:PO4 Link out to SuperLigands:PO4 Link out to SuperHapten:PO4
     
     
  •  
    Move Section Derived Data Hide
     
     
Reset Layout
 
< Biological Assembly 1    Help >
Help | Display Options
Biological assembly 1 generated by PISA (software)
 
 
 
  •  
    Move Section Deposition Summary Hide
    Authors:   Wang, Y.,   Li, H.,   Sheng, G.,   Patel, D.J.

    Deposition:   2009-06-16
    Release:   2009-10-06
    Last Modified (REVDAT):   2009-10-20
     
     
  •  
    Move Section Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Experimental Data:   Download Structure Factors  [ EDS External Link to EDS ]
    View a histogram of Resolution Resolution[Å]: 3.21
    R-Value: 0.229 (obs.)
    R-Free: 0.273
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 111.25 α = 90.00 
    b = 116.90 β = 90.00 
    c = 170.50 γ = 90.00