3HUK

Benzylacetate in complex with T4 lysozyme L99A/M102Q


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.29 Å
  • R-Value Free: 0.185
  • R-Value Work: 0.166

Literature

Macromolecules
Sequence Display for 3HUK

Classification: HYDROLASE

Total Structure Weight: 19047.73

Macromolecule Entities
Molecule Chains Length Organism Details
Lysozyme A 164 Enterobacteria phage t4 sensu lato EC#: 3.2.1.17 IUBMB
Mutation: S38D, L99A, M102Q, N144D
Gene Name(s): E
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
J0Z
Query on J0Z

A benzyl acetate
C9 H10 O2
QUKGYYKBILRGFE-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BME
Query on BME

A BETA-MERCAPTOETHANOL
C2 H6 O S
DGVVWUTYPXICAM-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
J0Z N/A in BindingDB
Kd: 350000 nM  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.29 Å
  • R-Value Free: 0.185
  • R-Value Work: 0.166
  • Space Group: P 32 2 1

Unit Cell:

Length (Å) Angle (°)
a = 60.02 α = 90.00
b = 60.02 β = 90.00
c = 96.47 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-06-14
  • Released Date: 2009-11-03
  • Deposition author(s): Boyce, S.E., Mobley, D.L., Rocklin, G.J., Graves, A.P., Dill, K.A., Shoichet, B.K.

Revision History

  • Version 1_0: 2009-11-03

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance