3HU1

Structure of p97 N-D1 R95G mutant in complex with ATPgS


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.81 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.240

Literature

Macromolecules
Sequence Display for 3HU1

Classification: TRANSPORT PROTEIN

Total Structure Weight: 330172.34

Macromolecule Entities
Molecule Chains Length Organism Details
Transitional endoplasmic reticulum ATPase A, B, C..., D, E, FA, B, C, D, E, F 489 Homo sapiens EC#: 3.6.4.6 IUBMB
Fragment: residues 1-481
Mutation: R95G
Gene Name(s): VCP Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AGS
Query on AGS

A, B, C, D, E, F PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
ATP-GAMMA-S; ADENOSINE 5'-(3-THIOTRIPHOSPHATE); ADENOSINE 5'- (GAMMA-THIOTRIPHOSPHATE); ADENOSINE-5'-DIPHOSPHATE MONOTHIOPHOSPHATE (Synonym)
C10 H16 N5 O12 P3 S
NLTUCYMLOPLUHL-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B, C, D, E, F MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
AGS N/A in BindingDB
N/A in BindingMoad
Kd: 130 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.81 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.240
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 92.76 α = 97.66
b = 103.28 β = 91.88
c = 107.69 γ = 89.75

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-06-12
  • Released Date: 2010-06-16
  • Deposition author(s): Tang, W.-K.

Revision History

  • 2011-07-13
    Type: Advisory, Refinement description, Version format compliance
  • 2012-02-15
    Type: Non-polymer description