3GS6

Vibrio Cholerea family 3 glycoside hydrolase (NagZ)in complex with N-butyryl-PUGNAc


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.181

Literature

Macromolecules
Sequence Display for 3GS6

Classification: HYDROLASE

Total Structure Weight: 38280.72

Macromolecule Entities
Molecule Chains Length Organism Details
Beta-hexosaminidase A 340 Vibrio cholerae EC#: 3.2.1.52 IUBMB
Mutation: E19A, Q22A, K54A
Gene Name(s): nagZ VC_0692
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NP6
Query on NP6

A [[(3R,4R,5S,6R)-3-(BUTANOYLAMINO)-4,5-DIHYDROXY- 6-(HYDROXYMETHYL)OXAN-2-YLIDENE]AMINO] N- PHENYLCARBAMATE
C17 H23 N3 O7
ITVRELFVFCOUMV-ZVZWZHPPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.181
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 47.78 α = 90.00
b = 86.02 β = 90.00
c = 86.22 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-03-26
  • Released Date: 2009-06-30
  • Deposition author(s): Balcewich, M.D., Mark, B.L.

Revision History

  • 2011-08-17
    Type: Non-polymer description | Details: --
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update