3GFP

Structure of the C-terminal domain of the DEAD-box protein Dbp5


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.191

Literature

Macromolecules
Sequence Display for 3GFP

Classification: HYDROLASE

Total Structure Weight: 21367.73

Macromolecule Entities
Molecule Chains Length Organism Details
DEAD box protein 5 A 189 Saccharomyces cerevisiae EC#: 3.6.4.13 IUBMB
Fragment: Helicase C-terminal domain
Gene Name(s): DBP5 RAT8 YOR046C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.191
  • Space Group: P 62

Unit Cell:

Length (Å) Angle (°)
a = 82.42 α = 90.00
b = 82.42 β = 90.00
c = 56.58 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-02-27
  • Released Date: 2009-09-01
  • Deposition author(s): Erzberger, J.P., Dossani, Z.Y., Weirich, C.S., Weis, K., Berger, J.M.

Revision History

  • Version 1_0: 2009-09-01

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Advisory, Refinement description, Version format compliance