3G5V

Antibodies Specifically Targeting a Locally Misfolded Region of Tumor Associated EGFR


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.279
  • R-Value Work: 0.226

Literature

Macromolecules
Sequence Display for 3G5V

Classification: IMMUNE SYSTEM

Total Structure Weight: 48256.07

Macromolecule Entities
Molecule Chains Length Organism Details
806 light chain A 212 Mus musculus
808 heavy chain B 213 Mus musculus
Epidermal Growth Factor Receptor peptide C 16 Homo sapiens EC#: 2.7.10.1 IUBMB
Gene Name(s): EGFR Gene View ERBB ERBB1 HER1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: inferred by homology | Group: ALPHA-HELICAL

Subgroup Name: Channels: Potassium, Sodium, & Proton Ion-Selective

Protein Name: KvAP Voltage-gated potassium Channel in complex with Fab


Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

A ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FMT
Query on FMT

B, C FORMIC ACID
C H2 O2
BDAGIHXWWSANSR-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.279
  • R-Value Work: 0.226
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 35.92 α = 90.00
b = 83.16 β = 92.43
c = 72.21 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-02-05
  • Released Date: 2010-02-09
  • Deposition author(s): Garrett, T.P.J., Burgess, A.W., Huyton, T., Xu, Y.

Revision History

  • 2011-07-13
    Type: Advisory, Refinement description, Version format compliance
  • 2011-10-12
    Type: Structure summary