3FWX

The crystal structure of the peptide deformylase from Vibrio cholerae O1 biovar El Tor str. N16961


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.202

Literature

Macromolecules
Sequence Display for 3FWX

Classification: HYDROLASE

Total Structure Weight: 38850.01

Macromolecule Entities
Molecule Chains Length Organism Details
Peptide deformylase A, B 169 Vibrio cholerae Gene Name(s): def1 VC_0046
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.202
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 61.31 α = 90.00
b = 61.46 β = 90.00
c = 210.34 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-01-19
  • Released Date: 2009-03-17
  • Deposition author(s): Zhang, R., Zhou, M., Stam, J., Anderson, W., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History

  • Version 1_0: 2009-03-17

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Advisory, Version format compliance