3F6M

Crystal Structure of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF from Yersinia pestis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.96 Å
  • R-Value Free: 0.203
  • R-Value Work: 0.194

Literature

Macromolecules
Sequence Display for 3F6M

Classification: LYASE

Total Structure Weight: 17663.55

Macromolecule Entities
Molecule Chains Length Organism Details
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase A 165 Yersinia pestis EC#: 4.6.1.12 IUBMB
Gene Name(s): ispF YPO3360 y0829 YP_0327
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 146.64 α = 90.00
b = 146.64 β = 90.00
c = 146.64 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-11-06
  • Released Date: 2008-11-25
  • Deposition author(s): Kim, Y., Maltseva, N., Stam, J., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History

  • Version 1_0: 2008-11-25

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance