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Crystal structure of a translation termination complex formed with release factor RF2. This file contains the 50S subunit of the second 70S ribosome. The entire crystal structure contains two 70S ribosomes as described in remark 400.
 
 
DOI:10.2210/pdb3f1h/pdb   NDB ID: RR0235
3F1H
 
Split Entry
The asymmetric unit for this structure is composed of multiple PDB entries:
3F1E   3F1F   3F1G   3F1H  
Download All Files   
 
 
 
Primary Citation
spinning wheel
 
 
  •  
    Move Section Molecular Description Hide
    Classification: Ribosome
    Structure Weight: 1408805.08
     
    Molecule:23S RRNA
    Polymer:1Type:polyribonucleotideLength:2894
    Chains:A
    Molecule:5S RRNA
    Polymer:2Type:polyribonucleotideLength:124
    Chains:B
    Molecule:50S ribosomal protein L2
    Polymer:3Type:polypeptide(L)Length:276
    Chains:D
    Molecule:50S ribosomal protein L3
    Polymer:4Type:polypeptide(L)Length:206
    Chains:E
    Molecule:50S ribosomal protein L4
    Polymer:5Type:polypeptide(L)Length:210
    Chains:F
    Molecule:50S ribosomal protein L5
    Polymer:6Type:polypeptide(L)Length:182
    Chains:G
    Molecule:50S ribosomal protein L6
    Polymer:7Type:polypeptide(L)Length:180
    Chains:H
    Molecule:50S ribosomal protein L9
    Polymer:8Type:polypeptide(L)Length:148
    Chains:I
    Molecule:50S ribosomal protein L11
    Polymer:9Type:polypeptide(L)Length:147
    Chains:K
    Molecule:50S ribosomal protein L13
    Polymer:10Type:polypeptide(L)Length:163
    Chains:N
    Molecule:50S ribosomal protein L14
    Polymer:11Type:polypeptide(L)Length:122
    Chains:O
    Molecule:50S ribosomal protein L15
    Polymer:12Type:polypeptide(L)Length:150
    Chains:P
    Molecule:50S ribosomal protein L16
    Polymer:13Type:polypeptide(L)Length:141
    Chains:Q
    Molecule:50S ribosomal protein L17
    Polymer:14Type:polypeptide(L)Length:118
    Chains:R
    Molecule:50S ribosomal protein L18
    Polymer:15Type:polypeptide(L)Length:112
    Chains:S
    Molecule:50S ribosomal protein L19
    Polymer:16Type:polypeptide(L)Length:146
    Chains:T
    Molecule:50S ribosomal protein L20
    Polymer:17Type:polypeptide(L)Length:118
    Chains:U
    Molecule:50S ribosomal protein L21
    Polymer:18Type:polypeptide(L)Length:101
    Chains:V
    Molecule:50S ribosomal protein L22
    Polymer:19Type:polypeptide(L)Length:113
    Chains:W
    Molecule:50S ribosomal protein L23
    Polymer:20Type:polypeptide(L)Length:96
    Chains:X
    Molecule:50S ribosomal protein L24
    Polymer:21Type:polypeptide(L)Length:110
    Chains:Y
    Molecule:50S ribosomal protein L25
    Polymer:22Type:polypeptide(L)Length:206
    Chains:Z
    Molecule:50S ribosomal protein L27
    Polymer:23Type:polypeptide(L)Length:85
    Chains:0
    Molecule:50S ribosomal protein L28
    Polymer:24Type:polypeptide(L)Length:98
    Chains:1
    Molecule:50S ribosomal protein L29
    Polymer:25Type:polypeptide(L)Length:72
    Chains:2
    Molecule:50S ribosomal protein L30
    Polymer:26Type:polypeptide(L)Length:60
    Chains:3
    Molecule:50S ribosomal protein L31
    Polymer:27Type:polypeptide(L)Length:60
    Chains:5
    Molecule:50S ribosomal protein L32
    Polymer:28Type:polypeptide(L)Length:54
    Chains:6
    Molecule:50S ribosomal protein L33
    Polymer:29Type:polypeptide(L)Length:49
    Chains:7
    Molecule:50S ribosomal protein L34
    Polymer:30Type:polypeptide(L)Length:65
    Chains:8
    Molecule:50S ribosomal protein L35
    Polymer:31Type:polypeptide(L)Length:97
    Chains:4
     
     
  •  
    Move Section Source Hide
    Polymer: 1
    Scientific Name: Thermus thermophilus Go to NCBI Taxonomy entry  
    Polymer: 2
    Scientific Name: Thermus thermophilus Go to NCBI Taxonomy entry  
    Polymer: 3
    Scientific Name: Thermus thermophilus Go to NCBI Taxonomy entry  
    Polymer: 4
    Scientific Name: Thermus thermophilus Go to NCBI Taxonomy entry  
    Polymer: 5
    Scientific Name: Thermus thermophilus Go to NCBI Taxonomy entry  
    Polymer: 6
    Scientific Name: Thermus thermophilus Go to NCBI Taxonomy entry  
    Polymer: 7
    Scientific Name: Thermus thermophilus Go to NCBI Taxonomy entry  
    Polymer: 8
    Scientific Name: Thermus thermophilus Go to NCBI Taxonomy entry  
    Polymer: 9
    Scientific Name: Thermus thermophilus Go to NCBI Taxonomy entry  
    Polymer: 10
    Scientific Name: Thermus thermophilus Go to NCBI Taxonomy entry  
    Polymer: 11
    Scientific Name: Thermus thermophilus Go to NCBI Taxonomy entry  
    Polymer: 12
    Scientific Name: Thermus thermophilus Go to NCBI Taxonomy entry  
    Polymer: 13
    Scientific Name: Thermus thermophilus Go to NCBI Taxonomy entry  
    Polymer: 14
    Scientific Name: Thermus thermophilus Go to NCBI Taxonomy entry  
    Polymer: 15
    Scientific Name: Thermus thermophilus Go to NCBI Taxonomy entry  
    Polymer: 16
    Scientific Name: Thermus thermophilus Go to NCBI Taxonomy entry  
    Polymer: 17
    Scientific Name: Thermus thermophilus Go to NCBI Taxonomy entry  
    Polymer: 18
    Scientific Name: Thermus thermophilus Go to NCBI Taxonomy entry  
    Polymer: 19
    Scientific Name: Thermus thermophilus Go to NCBI Taxonomy entry  
    Polymer: 20
    Scientific Name: Thermus thermophilus Go to NCBI Taxonomy entry  
    Polymer: 21
    Scientific Name: Thermus thermophilus Go to NCBI Taxonomy entry  
    Polymer: 22
    Scientific Name: Thermus thermophilus Go to NCBI Taxonomy entry  
    Polymer: 23
    Scientific Name: Thermus thermophilus Go to NCBI Taxonomy entry  
    Polymer: 24
    Scientific Name: Thermus thermophilus Go to NCBI Taxonomy entry  
    Polymer: 25
    Scientific Name: Thermus thermophilus Go to NCBI Taxonomy entry  
    Polymer: 26
    Scientific Name: Thermus thermophilus Go to NCBI Taxonomy entry  
    Polymer: 27
    Scientific Name: Thermus thermophilus Go to NCBI Taxonomy entry  
    Polymer: 28
    Scientific Name: Thermus thermophilus Go to NCBI Taxonomy entry  
    Polymer: 29
    Scientific Name: Thermus thermophilus Go to NCBI Taxonomy entry  
    Polymer: 30
    Scientific Name: Thermus thermophilus Go to NCBI Taxonomy entry  
    Polymer: 31
    Scientific Name: Thermus thermophilus Go to NCBI Taxonomy entry  
     
     
  •  
    Move Section Related PDB Entries Hide
    Id Details
    3D5A  RF1-bound 70S termination complex 
    3D5B  RF1-bound 70S termination complex 
    3D5C  RF1-bound 70S termination complex 
    3D5D  RF1-bound 70S termination complex 
     
     
  •  
    Move Section Ligand Chemical Component Hide
    Identifier Name Formula Interaction View Links
    MG     MAGNESIUM ION Mg 3DLigand Explorer Link out to Ligand Expos:MG Link out to SuperLigands:MG Link out to SuperHapten:MG
     
     
  •  
    Move Section Derived Data Hide
     
     
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< Biological Assembly 1    Help >
View in Jmol
Composite of PDB entries (3F1E and 3F1F)
 
 
 
  •  
    Move Section Deposition Summary Hide
    Authors:   Korostelev, A.,   Asahara, H.,   Lancaster, L.,   Laurberg, M.,   Hirschi, A.,   Noller, H.F.

    Deposition:   2008-10-27
    Release:   2008-12-23
     
     
  •  
    Move Section Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Experimental Data:   Download Structure Factors
    View a histogram of Resolution Resolution[Å]: 3.00
    R-Value: 0.281 (obs.)
    R-Free: 0.316
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 211.24 α = 90.00 
    b = 456.78 β = 90.00 
    c = 618.71 γ = 90.00