3EDG

Crystal structure of bone morphogenetic protein 1 protease domain

Structural Biology Knowledgebase: 3EDG SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.27 Å
  • R-Value Free: 0.177
  • R-Value Work: 0.144

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3EDG

Classification: HYDROLASE

Total Structure Weight: 23276.21

Macromolecule Entities
Molecule Chains Length Organism Details
Bone morphogenetic protein 1 A 202 Homo sapiens EC#: 3.4.24.19 IUBMB
Fragment: protease domain
Gene Name(s): BMP1 Gene View PCOLC

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACE
Query on ACE

A ACETYL GROUP
C2 H4 O
IKHGUXGNUITLKF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.27 Å
  • R-Value Free: 0.177
  • R-Value Work: 0.144
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 55.43 α = 90.00
b = 57.26 β = 90.00
c = 68.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-09-03
  • Released Date: 2008-09-16
  • Deposition author(s): Mac Sweeney, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4