3DNB

HELIX GEOMETRY, HYDRATION, AND G.A MISMATCH IN A B-DNA DECAMER

Structural Biology Knowledgebase: 3DNB SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Observed: 0.164

Literature

Macromolecules
Sequence Display for 3DNB

Classification: DNA

Total Structure Weight: 3141.97

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*CP*CP*AP*AP*GP*AP*TP*TP*GP*G)-3') A 10 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Observed: 0.164
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 32.52 α = 90.00
b = 26.17 β = 118.90
c = 34.30 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 1988-03-18
  • Released Date: 1989-01-09
  • Deposition author(s): Prive, G.G., Dickerson, R.E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Flag nonstandard coordinate frame | Details: Tagged nonstandard coordinate frame