3DBE

Crystal structure of an activated (Thr->Asp) Polo-like kinase 1 (Plk1) catalytic domain in complex with Compound 557


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.32 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.232

Literature

Macromolecules
Sequence Display for 3DBE

Classification: TRANSFERASE

Total Structure Weight: 35066.25

Macromolecule Entities
Molecule Chains Length Organism Details
Polo-like kinase 1 A 301 Danio rerio EC#: 2.7.11.21 IUBMB
Fragment: Plk1 kinase domain
Mutation: T196D
Gene Name(s): plk1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
4FR
Query on 4FR

A 3'-chloro-5'-[6-({2-methoxy-4-[(1-methylpiperidin- 4-yl)carbamoyl]phenyl}amino)-3-methyl-1H- pyrazolo[4,3-c]pyridin-1-yl]biphenyl-2-carboxamide
3- c]pyridin-1-yl}-biphenyl-2-carboxylic acid amide, (Synonym)
C34 H34 Cl N7 O3
CQZVQAYBJDSPFL-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.32 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.232
  • Space Group: I 2 3

Unit Cell:

Length (Å) Angle (°)
a = 136.00 α = 90.00
b = 136.00 β = 90.00
c = 136.00 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-05-31
  • Released Date: 2008-10-07
  • Deposition author(s): Elling, R.A., Barr, K.J., Romanowski, M.J.

Revision History

  • Version 1_0: 2008-10-07

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance