3DB8

Crystal structure of an activated (Thr->Asp) Polo-like kinase 1 (Plk1) catalytic domain in complex with Compound 041


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.15 Å
  • R-Value Free: 0.274
  • R-Value Work: 0.226

Literature

Macromolecules
Sequence Display for 3DB8

Classification: TRANSFERASE

Total Structure Weight: 36400.85

Macromolecule Entities
Molecule Chains Length Organism Details
Polo-like kinase 1 A 317 Danio rerio EC#: 2.7.11.21 IUBMB
Fragment: Plk1 kinase domain
Mutation: T196D
Gene Name(s): plk1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1FR
Query on 1FR

A 3-[3-chloro-5-(5-{[(1S)-1-phenylethyl]amino}isoxazolo[5,4- c]pyridin-3-yl)phenyl]propan-1-ol
4- c]pyridin-3-yl]-phenyl}-propan-1-ol, (Synonym)
C23 H22 Cl N3 O2
MMGKIHLBFPJYJL-HNNXBMFYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
1FR N/A in BindingDB
N/A in BindingMoad
IC50: 99 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.15 Å
  • R-Value Free: 0.274
  • R-Value Work: 0.226
  • Space Group: I 2 3

Unit Cell:

Length (Å) Angle (°)
a = 135.12 α = 90.00
b = 135.12 β = 90.00
c = 135.12 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-05-30
  • Released Date: 2008-10-07
  • Deposition author(s): Elling, R.A., Hanan, E.J., Lew, W., Romanowski, M.J.

Revision History

  • 2011-07-13
    Type: Version format compliance