3BUK

Crystal Structure of the Neurotrophin-3 and p75NTR Symmetrical Complex

Structural Biology Knowledgebase: 3BUK SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.288
  • R-Value Work: 0.224

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3BUK

Classification: SIGNALING PROTEIN

Total Structure Weight: 63861.26

Macromolecule Entities
Molecule Chains Length Organism Details
Neurotrophin-3 A, B 119 Homo sapiens Gene Name(s): NTF3 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Tumor necrosis factor receptor superfamily member 16 C, D 167 Rattus norvegicus Fragment: ectodomain
Mutation: N42S
Gene Name(s): Ngfr Tnfrsf16
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

C, D N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.288
  • R-Value Work: 0.224
  • Space Group: H 3
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 125.80 α = 90.00
b = 125.80 β = 90.00
c = 133.10 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-01-02
  • Released Date: 2008-07-15
  • Deposition author(s): Jiang, T., Gong, Y., Cao, P., Yu, H.J.

Revision History

  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4