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Crystal Structure of the Neurotrophin-3 and p75NTR Symmetrical Complex
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Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Signaling Protein
    Structure Weight: 63861.22
    Molecule: Neurotrophin-3
    Polymer: 1 Type: protein Length: 119
    Chains: A, B
    Organism: Homo sapiens
    Gene Name: Gene View for NTF3
    UniProtKB: Protein Feature View | Search PDB | P20783  
    Molecule: Tumor necrosis factor receptor superfamily member 16
    Polymer: 2 Type: protein Length: 167
    Chains: C, D
    Fragment: ectodomain
    Organism: Rattus norvegicus
    Gene Names: Ngfr Tnfrsf16
    UniProtKB: Protein Feature View | Search PDB | P07174  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Rattus norvegicus   Taxonomy   Common Name: Rat Expression System: Spodoptera frugiperda  
     
  •   Related PDB Entries Hide
    Identifier Details
    1NT3  The same protein complexed with p75. 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    NAG
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    NAG C8 H15 N O6
    N-ACETYL-D-GLUCOSAMINE
     
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  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Jiang, T.,  Gong, Y.,  Cao, P.,  Yu, H.J.

    Deposition:   2008-01-02
    Release:   2008-07-15
    Last Modified (REVDAT):   2011-07-13
     
  •   Revision History    Hide
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    2011-07-13
    Non-polymer description
    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.60
    R-Value: 0.227 (obs.)
    R-Free: 0.288
    Space Group: H 3
    Unit Cell:
      Length [Å] Angles [°]
    a = 125.80 α = 90.00 
    b = 125.80 β = 90.00 
    c = 133.10 γ = 120.00