3BPS

PCSK9:EGF-A complex

Structural Biology Knowledgebase: 3BPS SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.41 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.203

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3BPS

Classification: HYDROLASE / Lipid Transport

Total Structure Weight: 77858.48

Macromolecule Entities
Molecule Chains Length Organism Details
Proprotein convertase subtilisin/kexin type 9 P 100 Homo sapiens EC#: 3.4.21 IUBMB
Fragment: Prodomain, UNP residues 53-152
Gene Name(s): PCSK9 Gene View NARC1 PSEC0052
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Proprotein convertase subtilisin/kexin type 9 A 540 Homo sapiens EC#: 3.4.21 IUBMB
Fragment: Catalytic domain, UNP residues 153-692
Gene Name(s): PCSK9 Gene View NARC1 PSEC0052
Low-density lipoprotein receptor E 83 Homo sapiens Fragment: EGF-like 1, EGF-like 2 domains, UNP residues 314-393
Gene Name(s): LDLR Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

E CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.41 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.203
  • Space Group: P 41 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 116.95 α = 90.00
b = 116.95 β = 90.00
c = 134.88 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-12-19
  • Released Date: 2008-02-12
  • Deposition author(s): Kwon, H.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor