Download MendeleyStructural Basis for the Inhibition of Bacterial NAD+ Dependent DNA Ligase
Pinko, C., Borchardt, A., Nikulin, V., Su, Y.To be published.
3BAC
Structural Basis for the Inhibition of Bacterial NAD+ Dependent DNA Ligase
- PDB DOI: https://doi.org/10.2210/pdb3BAC/pdb
- Classification: LIGASE
- Organism(s): Haemophilus influenzae
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2007-11-07 Released: 2008-11-11
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.00 Å
- R-Value Free: 0.265
- R-Value Work: 0.216
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| DNA ligase | 270 | Haemophilus influenzae | Mutation(s): 0 Gene Names: ligN, lig EC: 6.5.1.2 |  | |
UniProt | |||||
Find proteins for P43813 (Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)) Explore P43813 Go to UniProtKB: P43813 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P43813 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 3B9 Query on 3B9 | E [auth A] | N-[2-(2,4-diaminopyrido[2,3-d]pyrimidin-7-yl)-2-methylpropyl]-4-phenoxybenzamide C24 H24 N6 O2 FDJWFDQRPKKBFA-UHFFFAOYSA-N |  | ||
| PO4 Query on PO4 | B [auth A], C [auth A], D [auth A] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.00 Å
- R-Value Free: 0.265
- R-Value Work: 0.216
- Space Group: P 62 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 95.031 | α = 90 |
| b = 95.031 | β = 90 |
| c = 197.183 | γ = 120 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| PDB_EXTRACT | data extraction |
| CNX | refinement |
Entry History
Deposition Data
- Released Date: 2008-11-11 Deposition Author(s): Pinko, C.
Revision History (Full details and data files)
- Version 1.0: 2008-11-11
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2024-02-21
Changes: Data collection, Database references, Derived calculations
