3A4R

The crystal structure of SUMO-like domain 2 in Nip45


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.0 Å
  • R-Value Free: 0.184
  • R-Value Work: 0.158

Literature

Macromolecules
Sequence Display for 3A4R

Classification: TRANSCRIPTION

Total Structure Weight: 17576.03

Macromolecule Entities
Molecule Chains Length Organism Details
NFATC2-interacting protein A, B 79 Mus musculus Fragment: SLD2, Ubiquitin-like domain, residues 339-412
Gene Name(s): Nfatc2ip Nip45
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, B 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.0 Å
  • R-Value Free: 0.184
  • R-Value Work: 0.158
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 26.95 α = 90.00
b = 35.37 β = 97.18
c = 68.94 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-07-14
  • Released Date: 2010-02-02
  • Deposition author(s): Sekiyama, N., Arita, K., Ikeda, Y., Ariyoshi, M., Tochio, H., Saitoh, H., Shirakawa, M.

Revision History

  • Version 1_0: 2010-02-02

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance