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BINDING OF THE MODIFIED DAUNORUBICIN WP401 ADJACENT TO A T-G BASE PAIR INDUCES THE REVERSE WATSON-CRICK CONFORMATION: CRYSTAL STRUCTURES OF THE WP401-TGGCCG AND WP401-CGG[BR5C]CG COMPLEXES
 
 
DOI:10.2210/pdb380d/pdb   NDB ID: DDFB76
380D
 
Primary Citation
spinning wheel
 
 
  •  
    Move Section Molecular Description Hide
    Classification: DNA
    Structure Weight: 5019.13
     
    Molecule:DNA (5'-D(*CP*GP*(G49)P*(CBR)P*CP*G)-3')
    Polymer:1Type:polydeoxyribonucleotideLength:6
    Chains:A, B
     
     
  •  
    Move Section Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct Go to NCBI Taxonomy entry  
     
     
  •  
    Move Section Ligand Chemical Component Hide
    Identifier Name Formula Interaction View Links
    DM8     2'-BROMO-4'-EPIDAUNORUBICIN C27 H28 Br N O10 3DLigand Explorer Link out to Ligand Expos:DM8 Link out to SuperLigands:DM8 Link out to SuperHapten:DM8
     
     
  •  
    Move Section Modified Residues Hide
    Identifier Name Formula Interaction View Links
    G49 N2-METHYL-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE (parent: DG)(type: dnaLinking) C11 H16 N5 O7 P Link out to Ligand Expos:G49 Link out to SuperLigands:G49 Link out to SuperHapten:G49 2D
    CBR 5-BROMO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE (parent: DC)(type: dnaLinking) C9 H13 Br N3 O7 P Link out to Ligand Expos:CBR Link out to SuperLigands:CBR Link out to SuperHapten:CBR 2D
     
     
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  •  
    Move Section Deposition Summary Hide
    Authors:   Dutta, R.,   Gao, Y.-G.,   Priebe, W.,   Wang, A.H.-J.

    Deposition:   1998-02-18
    Release:   1998-07-13
    Last Modified (REVDAT):   2009-02-24
     
     
  •  
    Move Section Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Experimental Data:   Download Structure Factors  [ EDS External Link to EDS ]
    View a histogram of Resolution Resolution[Å]: 2.00
    R-Value: 0.189 (obs.)
    R-Free: 0.242
    Space Group: P 43 21 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 37.23 α = 90.00 
    b = 37.23 β = 90.00 
    c = 61.96 γ = 90.00