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BINDING OF DAUNOMYCIN TO B-D-GLUCOSYLATED DNA FOUND IN PROTOZOA TRYPANOSOMA BRUCEI STUDIED BY X-RAY CRYSTALLOGRAPH
 
 
DOI:10.2210/pdb308d/pdb   NDB ID: DDFB70
308D
 
Primary Citation
spinning wheel
 
 
  •  
    Move Section Molecular Description Hide
    Classification: DNA
    Structure Weight: 5106.74
     
    Molecule:DNA (5'-D(*CP*GP*TP*AP*CP*G)-3')
    Polymer:1Type:polydeoxyribonucleotideLength:6
    Chains:A, B
     
     
  •  
    Move Section Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct Go to NCBI Taxonomy entry  
     
     
  •  
    Move Section Ligand Chemical Component Hide
    Identifier Name Formula Interaction View Links
    BGC     BETA-D-GLUCOSE C6 H12 O6 3DLigand Explorer Link out to Ligand Expos:BGC Link out to SuperLigands:BGC Link out to SuperHapten:BGC
    DM1     DAUNOMYCIN C27 H29 N O10 3DLigand Explorer Link out to Ligand Expos:DM1 Link out to SuperLigands:DM1 Link out to SuperHapten:DM1
    MG     MAGNESIUM ION Mg 3DLigand Explorer Link out to Ligand Expos:MG Link out to SuperLigands:MG Link out to SuperHapten:MG
     
     
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  •  
    Move Section Deposition Summary Hide
    Authors:   Gao, Y.-G.,   Robinson, H.,   Wijsman, E.R.,   Van Der Marel, G.A.,   Van Boom, J.H.,   Wang, A.H.-J.

    Deposition:   1997-01-15
    Release:   1997-01-21
    Last Modified (REVDAT):   2009-02-24
     
     
  •  
    Move Section Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Experimental Data:   Download Structure Factors  [ EDS External Link to EDS ]
    View a histogram of Resolution Resolution[Å]: 1.50
    R-Value: 0.175 (obs.)
    R-Free: 0.221
    Space Group: P 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 18.62 α = 69.09 
    b = 20.10 β = 90.40 
    c = 26.55 γ = 108.03