2Z5G

Crystal structure of T1 lipase F16L mutant

PDB DOI: https://doi.org/10.2210/pdb2Z5G/pdb

Classification: HYDROLASE
Organism(s): Geobacillus zalihae
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2007-07-08 Released: 2007-10-30
Deposition Author(s): Matsumura, H., Yamamoto, T., Inoue, T., Kai, Y.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free: 0.212
R-Value Work: 0.196
R-Value Observed: 0.196

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Novel cation-pi interaction revealed by crystal structure of thermoalkalophilic lipase

Matsumura, H., Yamamoto, T., Leow, T.C., Mori, T., Salleh, A.B., Basri, M., Inoue, T., Kai, Y., Rahman, R.N.Z.R.A.

(2007) Proteins 70: 592-598

PubMed: 17932933 Search on PubMed
DOI: https://doi.org/10.1002/prot.21799
Primary Citation of Related Structures:
2DSN, 2Z5G

Organizational Affiliation

Department of Applied Chemistry, Graduate School of Engineering, Osaka University, 2-1, Yamadaoka, Suita, Osaka 565-0871, Japan. matsumura@chem.eng.osaka-u.ac.jp

Macromolecule Content

Total Structure Weight: 86.59 kDa
Atom Count: 6,792
Modelled Residue Count: 774
Deposited Residue Count: 774
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Thermostable lipase	A, B	387	Geobacillus zalihae	Mutation(s): 1 EC: 3.1.1.3
UniProt
Find proteins for Q842J9 (Geobacillus zalihae) Explore Q842J9 Go to UniProtKB: Q842J9
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q842J9
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZN Query on ZN Download Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain F [auth B] MOL2 format, chain C [auth A] MOL2 format, chain F [auth B]	C [auth A], F [auth B]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain C [auth A] Focus chain F [auth B] Interactions & Density Focus chain C [auth A] Focus chain F [auth B]
CA Query on CA Download Ideal Coordinates CCD File SDF format, chain D [auth A] SDF format, chain G [auth B] MOL2 format, chain D [auth A] MOL2 format, chain G [auth B]	D [auth A], G [auth B]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N		Interactions Focus chain D [auth A] Focus chain G [auth B] Interactions & Density Focus chain D [auth A] Focus chain G [auth B]
CL Query on CL Download Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain H [auth B] MOL2 format, chain E [auth A] MOL2 format, chain H [auth B]	E [auth A], H [auth B]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Interactions Focus chain E [auth A] Focus chain H [auth B] Interactions & Density Focus chain E [auth A] Focus chain H [auth B]